A customary day for the celebration of fatherhood in Catholic Europe is known to date back to at least 1508. It is observed on March 19, as the feast day of Saint Joseph, who is referred to as the fatherly Nutritor Domini ("Nourisher of the Lord") in Catholicism and "the putative father of Jesus" in southern European tradition. This celebration was brought to the Americas by the Spanish and Portuguese. The Catholic Church actively supported the custom of a celebration of fatherhood on St. Joseph's Day from either the last years of the 14th century or from the early 15th century, apparently on the initiative of the Franciscans. In the Coptic Church, the celebration of fatherhood is also observed on St Joseph's Day, but the Copts observe this celebration on July 20. This Coptic celebration may date back to the fifth century.

Grace Golden Clayton was mourning the loss of her father, when in December 1907, the Monongah Mining Disaster in nearby Monongah killed 361 men, 250 of them fathers, leaving around a thousand fatherless children. Clayton suggested that her pastor Robert Thomas Webb honor all those fathers. Clayton's event did not have repercussions outside Fairmont for several reasons; among them were the city was overwhelmed by other events, the celebration was never promoted outside the town itself, and no proclamation of it was made by the city council. Also, two events overshadowed this event: the celebration of Independence Day July 4, 1908, with 12,000 attendants and several shows, including a hot-air balloon event, which took over the headlines in the following days, and the death of a 16-year-old girl on July 4. The local church and council were overwhelmed and they did not even think of promoting the event, and it was not celebrated again for many years. The original sermon was not reproduced by the press and it was lost. Finally, Clayton was a quiet person, who never promoted the event and never talked to other persons about it.

Father's Day was not celebrated in the US, outside Catholic traditions, until the 20th century. As a civic celebration in the US, it was inaugurated in the early 20th century to complement Mother's Day by celebrating fathers and male parenting. After Anna Jarvis' successful promotion of Mother's Day in Grafton, West Virginia, the first observance of a day honoring fathers was held on July 5, 1908, in Fairmont, West Virginia, in the Williams Memorial Methodist Episcopal Church South, now known as Central United Methodist Church.

On June 19, 1910, a Father's Day celebration was held at the YMCA in Spokane, Washington, by Sonora Smart Dodd. Her father, the civil war veteran William Jackson Smart, was a single parent who raised his six children there. She was also a member of Old Centenary Presbyterian Church (now Knox Presbyterian Church), where she first proposed the idea. After hearing a sermon about Jarvis' Mother's Day in 1909 at Central Methodist Episcopal Church, she told her pastor that fathers should have a similar holiday to honor them. Although she initially suggested June 5, her father's birthday, the pastors did not have enough time to prepare their sermons, and the celebration was deferred to the third Sunday in June. Several local clergymen accepted the idea, and on June 19, 1910, the first Father's Day, "sermons honoring fathers were presented throughout the city".

In 1911, Jane Addams proposed that a citywide Father's Day celebration be held in Chicago, but she was turned down.

In 1912, a Father's Day celebration was held in Vancouver, Washington, suggested by Methodist pastor J.J. Berringer of the Irvington Methodist Church. They mistakenly believed that they had been the first to celebrate such a day. They followed a 1911 suggestion by the Portland Oregonian.

A bill to accord national recognition of the holiday was introduced in Congress in 1913.

Harry C. Meek, a member of Lions Clubs International, claimed that he had first come up with the idea for Father's Day in 1915. Meek said that the third Sunday in June was chosen because it was his birthday. The Lions Club has named him the "Originator of Father's Day". Meek made many efforts to promote Father's Day and make it an official holiday.

In 1916, President Woodrow Wilson went to Spokane to speak at a Father's Day celebration and he wanted to make it an officially recognized federal holiday, but Congress resisted, fearing that it would become commercialized.

However, in the 1920s, Dodd stopped promoting the celebration because she was studying at the Art Institute of Chicago, and it faded into relative obscurity, even in Spokane.

US president Calvin Coolidge recommended in 1924 that the day be observed throughout the entire nation, but he stopped short at issuing a national proclamation.

In the 1930s, Dodd returned to Spokane and started promoting the celebration again, raising awareness at a national level.

By 1938, Dodd had the help of the Father's Day Council, founded by the New York Associated Men's Wear Retailers to consolidate and systematize the holiday's commercial promotion.

In 1957, Maine senator Margaret Chase Smith wrote a Father's Day proposal accusing Congress of ignoring fathers for 40 years while honoring mothers, thus "[singling] out just one of our two parents".

In 1966, President Lyndon B. Johnson issued the first presidential proclamation honoring fathers, designating the third Sunday in June as Father's Day.

The Fathers day was made a permanent national holiday when President Richard Nixon signed it into law in 1972.

In addition to Father's Day, International Men's Day is celebrated in many countries on November 19 in honor of men and boys.